ipyrad: interactive assembly and analysis of RADseq data sets

Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

In this documentation you can learn about the various features of ipyrad (Features), the broader motivation behind its design (Ethos), and access detailed Tutorials. Several new Analysis tools are included with ipyrad, and we are also building a large Cookbook with code for many common downstream analyses.

Got questions about ipyrad? Join the conversation at gitter.

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