ipyrad
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The ipyrad ethos
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Installation
Getting Started: Files and Data Types
Getting Started: Demultiplexing
Assembly: Parameters
Assembly: Seven Steps
Assembly: Branching and Merging
Assembly: Tutorials
API: ipyrad assembly workflow
Eaton & Ree (2013) single-end RAD data set
Demultiplex on i7 outer barcodes
API: ipyrad analysis tools
ipa.vcf_to_hdf5
ipa.treemix
ipa.pca
ipa.raxml
ipa.mrbayes
ipa.tetrad
ipyrad-analysis toolkit: STRUCTURE
Cookbook
ipa.sratools
ipa.baba
ipa.bucky
ipa.window_extacter
Frequenty Asked Questions
Troubleshooting Procedures
Release Notes
ipyrad
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