ipyrad
latest
  • The ipyrad ethos
  • Try it now
  • Installation
  • Getting Started: Files and Data Types
  • Getting Started: Demultiplexing
  • Assembly: Parameters
  • Assembly: Seven Steps
  • Assembly: Branching and Merging
  • Assembly: Tutorials
  • API: ipyrad assembly workflow
    • Eaton & Ree (2013) single-end RAD data set
    • Demultiplex on i7 outer barcodes
  • API: ipyrad analysis tools
    • ipa.vcf_to_hdf5
    • ipa.treemix
    • ipa.pca
    • ipa.raxml
    • ipa.mrbayes
    • ipa.tetrad
    • ipyrad-analysis toolkit: STRUCTURE
    • Cookbook
    • ipa.sratools
    • ipa.baba
    • ipa.bucky
    • ipa.window_extacter
  • Frequenty Asked Questions
  • Troubleshooting Procedures
  • Release Notes
ipyrad
  • Docs »
  • Welcome to ipyrad
  • Edit on GitHub

Welcome to ipyrad¶

Documentation¶

  • The ipyrad ethos
  • Try it now
  • Installation
  • Getting Started: Files and Data Types
  • Getting Started: Demultiplexing
  • Assembly: Parameters
  • Assembly: Seven Steps
  • Assembly: Branching and Merging
  • Assembly: Tutorials
  • API: ipyrad assembly workflow
    • Eaton & Ree (2013) single-end RAD data set
    • Demultiplex on i7 outer barcodes
  • API: ipyrad analysis tools
    • ipa.vcf_to_hdf5
    • ipa.treemix
    • ipa.pca
    • ipa.raxml
    • ipa.mrbayes
    • ipa.tetrad
    • ipyrad-analysis toolkit: STRUCTURE
    • Cookbook
    • ipa.sratools
    • ipa.baba
    • ipa.bucky
    • ipa.window_extacter
  • Frequenty Asked Questions
  • Troubleshooting Procedures
  • Release Notes

Citation¶

Eaton DAR & Overcast I. “ipyrad: Interactive assembly and analysis of RADseq datasets.” Bioinformatics (2020).

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© Copyright 2019, Deren Eaton & Isaac Overcast Revision 333779d2.

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